Difference between revisions of "DiffusionImaging"

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__NOTOC__
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#REDIRECT [[MitkDiffusion]]
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[[File:DiffusionImaging$MITK_DIsmall.png|thumb|400px]]
 
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== MITK Diffusion ==
 
−
 
 
−
=== Quicklinks ===
 
−
* '''Sourcecode''': [https://www.mitk.org/wiki/MitkGit Wiki-Page with instructions] and [http://http://mitk.org/git/?p=MITK.git;a=summary web interface] of the Git repository
 
−
* '''Download Section''' is [[#Downloads|here]]
 
−
 
 
−
----
 
−
 
 
−
 
 
−
The MITK Diffusion application offers a selection of image analysis algorithms for the processing of diffusion-weighted MR images. It encompasses the research of the [http://www.dkfz.de/en/mbi/projects/neuroimaging.html Medical Image Computing Group] in the Division Medical and Biological Informatics at the German Cancer Research Center (dkfz).
 
−
 
 
−
 
 
−
 
 
−
=== Features & Highlights ===
 
−
 
 
−
* Tensor and q-ball reconstruction
 
−
* Glyph visualization
 
−
* Quantification and partial volume clustering of tensor and q-ball images
 
−
* Global fiber tractography, visualization, and tract post-processing
 
−
* Brain network statistics and visualization (connectomics)
 
−
* Interactive exploration of Tract-based spatial statistics (TBSS) results
 
−
* Intra-voxel incoherent motion (IVIM) estimation
 
−
* Synthetic data generation
 
−
 
 
−
 
 
−
 
 
−
The MITK Diffusion application is based on the [https://www.mitk.org/wiki/ResearchPlatform MITK research platform] and the most of it is open-source. The available code is embedded into the source code of MITK as a module and can be accessed through the [https://www.mitk.org/wiki/MitkGit public git repository].
 
−
 
 
−
 
 
−
== Version ==
 
−
The current stable version is the MITK Diffusion 2014.10.02 release.
 
−
 
 
−
 
 
−
== Changelog ==
 
−
'''General'''
 
−
* Based on [[MITK_ReleaseNotes_2014.10|MITK 2014.10 Release]]
 
−
 
 
−
'''Diffusion'''
 
−
* Refactored the dicom diffusion loading
 
−
** You are now able to split Siemens mosaic images
 
−
** Support of GE and Philips data
 
−
* Reworked the MITK Diffusion GUI to be based around the View Navigator
 
−
** By putting less focus on perspectives it should be easier for users to find functionality they need and customize their experience to their needs
 
−
* Updated and refactored all mini apps
 
−
* Provide a mini app interface in the application itself
 
−
* A heavy focus was put on bugfixes and improving the user experience and stability of MITK Diffusion
 
−
* Added a view for creating random parcellations for connectomics
 
−
* Switched the diffusion readers/writers to the microservice based concept
 
−
 
 
−
 
 
−
== User manual ==
 
−
Please refer to the user manual of MITK Diffusion [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Documentation/MITK-Diffusion-2014.10-ReferenceManual.pdf 2014.10] or use the context help pages in the application.
 
−
 
 
−
 
 
−
== Known issues as of 2014.10 ==
 
−
* Bug 18420 - Crash during diffusion mosaic data import (OSX) - Fixed in 2014.10.02
 
−
* Bug 18606 - MiniApps have not been included in the installer - Fixed in 2014.10.02
 
−
* Bug 18650 - MiniApps returned non-standard XML - Fixed in 2014.10.02
 
−
* Bug 18688 - Memory leak in interpolation - Fixed in 2014.10.02
 
−
 
 
−
== Media ==
 
−
'''Publication:''' ''[http://www.schattauer.de/en/magazine/subject-areas/journals-a-z/methods/contents/archive/issue/1594/manuscript/18261.html MITK diffusion imaging]'', In Methods Inf Med 2012 Oct 11;51(5):441-8<br /> '''Authors:''' Fritzsche KH<sup>1</sup>, Neher PF<sup>1</sup>, Reicht I<sup>1</sup>, van Bruggen T<sup>1</sup>, Goch C<sup>1</sup>, Reisert M<sup>2</sup>, Nolden M<sup>1</sup>, Zelzer S<sup>1</sup>, Meinzer HP<sup>1</sup>, Stieltjes B<sup>1</sup><br /> '''Institution:''' <sup>1</sup>German Cancer Research Center, Heidelberg, Germany<br /><sup>2</sup>University Hospital Freiburg, Department of Radiology, Medical Physics, Freiburg, Germany
 
−
 
 
−
'''Publication:''' ''MITK-DI - A new diffusion imaging component for MITK.'' In Deserno TM, Handels H, Meinzer HP, Tolxdorff T (eds). Bildverarbeitung für die Medizin 2010. Heidelberg: Springer (2010) 246-250  <br /> '''Authors:''' Fritzsche KH<sup>1</sup>, Meinzer H-P<sup>1</sup><br /> '''Institution:''' <sup>1</sup>German Cancer Research Center
 
−
 
 
−
 
 
−
== Downloads ==
 
−
Version 2014.10 ( Release date: ''01-12-2014'' )
 
−
Version 2014.10.02 ( Release date: ''06-02-2014'' )
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2010: [http://www.microsoft.com/en-us/download/details.aspx?id=14632 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7
 
−
* Ubuntu 14.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)
 
−
 
 
−
The OS X 10.6 installer is compatible with OS X 10.7 (Lion) so there is no dedicated disk image build under 10.7.
 
−
 
 
−
 
 
−
=== Available installers ===
 
−
==== 2014.10.02 ====
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 14.04 and newer
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.8 and newer
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image]
 
−
|}
 
−
 
 
−
==== 2014.10.00 ====
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.00-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 14.04 and newer
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.00-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.8 and newer
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.00-mac64.dmg 10.8 OS X disk image]
 
−
|}
 
−
 
 
−
=== Testing data ===
 
−
A set of data for testing the functionality of the mitkDiffusion application is available [http://mitk.org/download/releases/MITK-Diffusion-2012/mitkDiffusion2012DemoData.tar.gz here].
 
−
 
 
−
 
 
−
== Contact ==
 
−
If you have questions about the application or if you would like to give us feedback, don't hesitate to [http://www.dkfz.de/en/mbi/people/Klaus_Maier-Hein.php contact us].
 
−
 
 
−
 
 
−
----
 
−
 
 
−
 
 
−
== MITK Diffusion - Release Archive ==
 
−
This section collects links and information for all released versions of the MITK Diffusion Application, but for the newest.
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Available Versions
 
−
! Release date
 
−
|-
 
−
| [[#Release_2014_04|MITK Diffusion 2014.04]]
 
−
| 24 Apr 2013
 
−
|-
 
−
| [[#Release_2013_09|MITK Diffusion 2013.09]]
 
−
| 10 Okt 2013
 
−
|-
 
−
| [[#Release_2013_06|MITK Diffusion 2013.06]]
 
−
| 04 Jul 2013
 
−
|-
 
−
| [[#Release_2013_03|MITK Diffusion 2013.03]]
 
−
| 04 Apr 2013
 
−
|-
 
−
| [[#Release_2012_12|MITK Diffusion 2012.12]]
 
−
| 21 Dec 2012
 
−
|-
 
−
| [[#Release_2012_09|MITK Diffusion 2012.09]]
 
−
| 02 Oct 2012
 
−
|-
 
−
| [[#Release_2012|MITK Diffusion 2012]]
 
−
| 07 May 2012
 
−
|-
 
−
| [[#Release_2011|MITK Diffusion 2011]]
 
−
| 02 Nov 2011
 
−
|}
 
−
 
 
−
<span id="Release_2014_04"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2014.04 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
== Changelog ==
 
−
'''General'''
 
−
* Based on [[MITK-ReleaseNotes-2014-03|MITK 2014.03 Release]]
 
−
* VTK was upgraded to '''version 6.1'''
 
−
* ITK was upgraded to '''version 4.5.1'''
 
−
* and many others
 
−
 
 
−
'''Diffusion'''
 
−
* QBall Multishell Rekonstruction: error handling improved
 
−
* Preprocessing-Functionality: Create single q-shell data out of multi q-shell data, using different radial signal fit methods like ADC averaging, kurtosis fitting or bi-exponential fitting.
 
−
* Filters for the denoising of dwi data were added
 
−
* Fiberfox:
 
−
** Improved four-compartment signal modeling using a voxel-wise defined volume fraction for the fourth compartment instead of a fixed value for all voxels.
 
−
** Many small bug-fixes.
 
−
 
 
−
Additional the minimum required version for
 
−
* CMake is now '''version 2.8.9'''
 
−
* and for Qt '''version 4.7'''
 
−
 
 
−
 
 
−
== User manual ==
 
−
Please refer to the user manual of MITK Diffusion [https://www.mitk.org/download/releases/MITK-Diffusion-2014.03/Documentation/html/ 2014.03] or use the context help pages in the application.
 
−
 
 
−
 
 
−
== Known issues as of 2014.03 ==
 
−
* bug 14655 Dicom import sometimes fails to detect b0 images
 
−
* bug 14490 Diffusion installer is not independent of the build-machine
 
−
* bug 14719 Maximum Intensity Projection is only possible for 21 slices
 
−
* bug 16234 DWI Registration do not support 2D images Error/Warning
 
−
* bug 14828 QBall Reconstruction - Images should get meaningful names
 
−
* bug 16154 Preprocessing manual does not explain all options
 
−
* bug 16160 IVIM view output images automatically close hierarchy
 
−
 
 
−
== Downloads ==
 
−
Version 2014.03 ( Release date: ''24-04-2014'' )
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2010: [http://www.microsoft.com/en-us/download/details.aspx?id=14632 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7
 
−
* Ubuntu 12.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)
 
−
 
 
−
The OS X 10.6 installer is compatible with OS X 10.7 (Lion) so there is no dedicated disk image build under 10.7.
 
−
 
 
−
 
 
−
=== Available installers ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| 
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2014.03/Windows/MITK-Diffusion-2014.03.00-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 12.04 and newer
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.03/Linux/MITK-Diffusion-2014.03.00-linux32.tar.gz Ubuntu (32 bit), tar.gz archive] 
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.03/Linux/MITK-Diffusion-2014.03.00-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
| 
 
−
|  [https://www.mitk.org/download/releases/MITK-Diffusion-2014.03/MacOS/MITK-Diffusion-2014.03.00-mac64.dmg 10.8 OS X disk image]
 
−
|}
 
−
</div></div>
 
−
 
 
−
<span id="Release_2013_09"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2013.09 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
== Changelog ==
 
−
* Redesign of the segmentation plugin
 
−
* Based on [[MITK-ReleaseNotes-2013-09|MITK 2013.09 Release]]
 
−
** Update of many third party libraries
 
−
** support for Visual Studio 2012
 
−
* Improvement of usability and workflow of several perspectives
 
−
** New motion correction view
 
−
** Tensor and Q-ball reconstruction will now show a preview when thresholding based on the b0 image
 
−
** Diffusion miniApps have been bundled in one binary
 
−
* The 2013.09.04 bugfix includes important fixes improving the head motion correction stability and corrects an error in the MD calculation
 
−
 
 
−
 
 
−
== User manual ==
 
−
Please refer to the user manual of MITK Diffusion [https://www.mitk.org/download/releases/MITK-Diffusion-2013.03/documentation/ 2013.03] or use the context help pages in the application.
 
−
 
 
−
 
 
−
== Downloads ==
 
−
Version 2013.09 ( Release date: ''10-10-2013'' )
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2010: [http://www.microsoft.com/en-us/download/details.aspx?id=5555 32 bit] or [http://www.microsoft.com/en-us/download/details.aspx?id=14632 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7
 
−
* Ubuntu 12.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)
 
−
 
 
−
The OS X 10.6 installer is compatible with OS X 10.7 (Lion) so there is no dedicated disk image build under 10.7.
 
−
 
 
−
 
 
−
=== Available installers ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.09/Windows/MITK-Diffusion-2013.09.04-win32.exe MS Windows (32 bit) installer]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.09/Windows/MITK-Diffusion-2013.09.04-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 12.04 and newer
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.09/Linux/MITK-Diffusion-2013.09.04-linux32.tar.gz  Ubuntu (32 bit), tar.gz archive] 
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.09/Linux/MITK-Diffusion-2013.09.04-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.09/MacOS/MITK-Diffusion-2013.09.04-mac64_10.6.dmg 10.6 OS X disk image]
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.09/MacOS/MITK-Diffusion-2013.09.04-mac64.dmg 10.8 OS X disk image]
 
−
|}
 
−
 
 
−
Installers for the 2013.09.00 version can be found [http://mitk.org/download/releases/MITK-Diffusion-2013.09/ here]
 
−
 
 
−
=== Testing data ===
 
−
A set of data for testing the functionality of the mitkDiffusion application is available [http://mitk.org/download/releases/MITK-Diffusion-2012/mitkDiffusion2012DemoData.tar.gz here].
 
−
 
 
−
 
 
−
== Contact ==
 
−
If you have questions about the application or if you would like to give us feedback, don't hesitate to [http://www.dkfz.de/en/mbi/people/Klaus_Fritzsche.php contact us].
 
−
</div></div>
 
−
 
 
−
<span id="Release_2013_06"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2013.06 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date: '''04-07-2013'''
 
−
 
 
−
== Changelog ==
 
−
* Based on the [[MITK-ReleaseNotes-2013-06|MITK 2013.06 Release]]
 
−
* Following the ITK support change in MITK, also MITK Diffusion now fully supports ITK4 ( the ITK3 support is discontinued )
 
−
* '''New Features'''
 
−
** new mini-applications for fiber direction extraction and evaluation
 
−
* Over thirty bugs were fixed across the different modules and plugins
 
−
 
 
−
 
 
−
== User manual ==
 
−
Please refer to the user manual of MITK Diffusion [https://www.mitk.org/download/releases/MITK-Diffusion-2013.03/documentation/ 2013.03] or use the context help pages in the application.
 
−
 
 
−
 
 
−
== Downloads ==
 
−
Version 2013.06 ( Release date: ''04-07-2013'' )
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7, Windows Vista
 
−
* Ubuntu 12.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)
 
−
 
 
−
The OS X 10.6 installer is compatible with OS X 10.7 (Lion) so there is no dedicated disk image build under 10.7.
 
−
 
 
−
 
 
−
=== Available installer ===
 
−
{|class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.06/Windows/MITK-Diffusion-2013.06.00-win32.exe MS Windows (32 bit) installer]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.06/Windows/MITK-Diffusion-2013.06.00-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 12.04 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.06/Linux/MITK-Diffusion-2013.06.00-linux32.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.06/Linux/MITK-Diffusion-2013.06.00-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.06/MacOS/MITK-Diffusion-2013.06.00-mac32-10.6.dmg 10.6 OS X disk image]
 
−
|  [http://mitk.org/download/releases/MITK-Diffusion-2013.06/MacOS/MITK-Diffusion-2013.06.00-mac64-10.8.dmg 10.8 OS X disk image]
 
−
|}
 
−
</div></div>
 
−
 
 
−
<span id="Release_2013_03"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2013.03 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date: '''04-04-2013'''
 
−
 
 
−
* Based on the [[MITK-ReleaseNotes-2013-03|MITK 2013.03 Release]]
 
−
 
 
−
 
 
−
=== Changelog ===
 
−
* New features in '''FiberFox'''
 
−
** Fiber Definition
 
−
*** Added functions to copy, translate, rotate and scale fibers including the corresponding fiducials
 
−
*** Fiducial alignment with voxel grid
 
−
*** Fiber definition with only two ROIs
 
−
* Signal Generation
 
−
** Extended diffusion models: Stick, Zeppelin, Tensor, Ball, Astrosticks, Dot
 
−
** Extended two-compartment model to four-compartment model
 
−
** Realistic simulation of relaxation effects. Parameters: T2 (per compartment), TE, T2' and line readout time
 
−
** Explicit definition of fiber radius used for the calculation of compartment volume fractions
 
−
** Changed the relative parameter SNR to the absolute parameter noise variance
 
−
** Removed internal signal normalization --> double voxel size in one dimension results in twice the signal strength
 
−
* Complete refactoring of the Fiberfox help page
 
−
* Fiber Processing View reodered and splitted into separate views: '''Fiber Processing''' and '''Fiber Extraction'''
 
−
* Modularization of the Diffusion Module into
 
−
** '''new submodules''' DiffusionCore, FiberTracking, Connectomics, Quantification
 
−
* New, user defined visualisation properties for connectomics networks added
 
−
* Several bugs fixed in both registration views
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7, Windows Vista
 
−
* Ubuntu 12.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)
 
−
 
 
−
The OS X 10.6 installer is compatible with OS X 10.7 (Lion) so there is no dedicated disk image build under 10.7.
 
−
 
 
−
 
 
−
=== Available installer ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/windows/MITK-Diffusion-2013.03.00-win32.exe MS Windows (32 bit) installer]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/windows/MITK-Diffusion-2013.03.00-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 11.04 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/linux/MITK-Diffusion-2013.03.00-linux32.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/linux/MITK-Diffusion-2013.03.00-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/macos/MITK-Diffusion-2013.03.00-10.6.dmg 10.6 OS X disk image]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2013.03/macos/MITK-Diffusion-2013.03.00-10.8.dmg 10.8 OS X disk image]
 
−
|}
 
−
 
 
−
=== Documentation ===
 
−
The user manual for the MITK Diffusion 2013.03 application can be found [https://www.mitk.org/download/releases/MITK-Diffusion-2013.03/documentation/ here].
 
−
</div></div>
 
−
 
 
−
<span id="Release_2012_12"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2012.12 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date: '''21-12-2012'''
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7, Windows Vista
 
−
* Ubuntu 11.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.7 (Lion)
 
−
 
 
−
 
 
−
=== Available installer ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/windows/MITK-Diffusion-2012.12.00-win32.exe MS Windows (32 bit) installer]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/windows/MITK-Diffusion-2012.12.00-win64.exe MS Windows (64 bit) installer]
 
−
| 
 
−
|-
 
−
! Linux
 
−
| Ubuntu 11.04 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/linux/MITK-Diffusion-2012.12.00-linux32.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/linux/MITK-Diffusion-2012.12.00-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
| 
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/macos/MITK-Diffusion-2012.12.00-OSX-10.6-mac32.dmg 10.6 OS X disk image]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/macos/MITK-Diffusion-2012.12.00-OSX-10.7-mac64.dmg 10.7 OS X disk image (.dmg)]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012.12/macos/MITK-Diffusion-2012.12.00-OSX-10.8-mac64.dmg 10.8 OS X disk image (.dmg)]
 
−
|}
 
−
</div></div>
 
−
 
 
−
<span id="Release_2012_09"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2012.09 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date : '''02 Oct 2012'''
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7, Windows Vista
 
−
* Ubuntu 11.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.7 (Lion)
 
−
 
 
−
 
 
−
=== Available installer ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/windows/MITK-Diffusion-2012.09-win32.exe MS Windows (32 bit) installer]
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/windows/MITK-Diffusion-2012.09-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 11.04 and newer
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/linux/MITK-Diffusion-2012.09-linux32.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/linux/MITK-Diffusion-2012.09-linux64.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/macos/MITK-Diffusion-2012.09-10.6.dmg 10.6 OS X disk image]
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2012/installers/macos/MITK-Diffusion-2012.09-10.7.dmg 10.7 OS X disk image (.dmg)]
 
−
|}
 
−
</div></div>
 
−
 
 
−
<div class="mw-collapsible mw-collapsed">
 
−
<span id="Release_2012"></span>
 
−
== Release 2012 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date : '''07 May 2012'''
 
−
 
 
−
 
 
−
== Changelog ==
 
−
A list of the major changes from the 2011 to the 2012 release of MITK Diffusion.
 
−
 
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
|rowspan="2" style="text-align:center;vertical-align:middle;" |'''Connectomics'''
 
−
|Added global clustering computation
 
−
|-
 
−
|Added generator for synthetic networks
 
−
|-
 
−
|rowspan="4" style="text-align:center;vertical-align:middle;"|'''Fiber Processing'''
 
−
|much more information about the selected fiber bundle is displayed
 
−
|-
 
−
|extraction of fibers passing through a 3D ROI (mitkSurface, STL mesh) is possible
 
−
|-
 
−
|fiber smoothing using spline interpolation added
 
−
|-
 
−
|fiber coloring by scalar map added
 
−
|-
 
−
|rowspan="3" style="text-align:center; vertical-align:middle;"|'''Gibbs Tracking'''
 
−
|tracking results can be saved automatically
 
−
|-
 
−
|major bug that caused only few fibers to be reconstructed was fixed
 
−
|-
 
−
|input of gfa image is not needed anymore
 
−
|-
 
−
|style="text-align:center; vertical-align:middle;"|'''Stochastic Tracking'''
 
−
|gui completely refactored
 
−
|-
 
−
|rowspan="3" style="text-align:center;vertical-align:middle;"|'''mitkFiberBundleX'''
 
−
|mitkFiberBundle is replaced by mitkFiberBundleX which is essentially a vtkPolyData which results in a much better performance and easier handling
 
−
|-
 
−
|fiber bundle are saved as vtkPolyData
 
−
|-
 
−
|old xml based fiber files can still be loaded and are automatically converted into the new mitkFiberBundleX
 
−
|-
 
−
|rowspan="3" style="text-align:center;vertical-align:middle;"|'''ODF Details'''
 
−
|refactored gui
 
−
|-
 
−
|tensor data is displayed
 
−
|-
 
−
|normalization of the ODFs is applied correctly
 
−
|-
 
−
|style="text-align:center; vertical-align:middle;"|'''Partial volume analysis'''
 
−
| Export of clustering result as image is now possible
 
−
|-
 
−
|rowspan="2" style="text-align:center; vertical-align:middle;"|'''Preprocessing'''
 
−
|the number of gradients of the selected image can be reduced while preserving an equal distribution of the gradients (as far as possible)
 
−
|-
 
−
|the gradient directions can be displayed as pointset
 
−
|-
 
−
|style="text-align:center; vertical-align:middle;"|'''Q-Ball Reconstruction'''
 
−
| removed erroneous numerical reconstruction method
 
−
|-
 
−
|style="text-align:center; vertical-align:middle;"|'''Segmentation'''
 
−
|fast interactive 3D interpolation added
 
−
|}
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the minimal OS version changed to '''Ubuntu 11.04''' because the compiler version available in 10.04 does not provide features needed by MITK
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
 
 
−
Tested systems
 
−
 
 
−
* Windows 7, Windows Vista
 
−
* Ubuntu 11.04 and newer
 
−
* OS X 10.6 (Snow Leopard), OS X 10.7 (Lion)
 
−
 
 
−
 
 
−
=== Documentation ===
 
−
You can access the MITK Diffusion online documentation [http://mitk.org/download/releases/MITK-Diffusion-2012/documentation/html/index.html here]
 
−
 
 
−
 
 
−
=== Available installer ===
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/windows/MITK-Diffusion-2012-win32.exe MS Windows (32 bit) installer]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/windows/MITK-Diffusion-2012-win64.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 11.04 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/linux/MITK-Diffusion-2012-Linux32bit-Build_07_05_2012.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/linux/MITK-Diffusion-2012-Linux64bit-Build_07_05_2012.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| OS X 10.6 and newer
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/macos/MITK-Diffusion-2012_10_6.dmg 10.6 OS X disk image (.dmg)]
 
−
| [http://mitk.org/download/releases/MITK-Diffusion-2012/installers/macos/MITK-Diffusion-2012_10_7.dmg 10.7 OS X disk image (.dmg)]
 
−
|}
 
−
</div></div>
 
−
<span id="Release_2011"></span>
 
−
<div class="mw-collapsible mw-collapsed">
 
−
== Release 2011 ==
 
−
 
 
−
 
 
−
<div class="mw-collapsible-content">
 
−
Release date : '''02 Nov 2011'''
 
−
 
 
−
 
 
−
=== Requirements ===
 
−
Additional system specific requirements:
 
−
 
 
−
* Windows
 
−
** If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582 32 bit] or [http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092 64 bit]
 
−
* Linux
 
−
** the [http://qt.nokia.com/downloads Qt framework], version 4.6.2 or later
 
−
** the tar.gz archive needs to be extracted into a folder whithout whitespaces in the path
 
−
 
 
−
 
 
−
=== Documentation ===
 
−
You can access the MITK Diffusion 2011 online documentation [http://mitk.org/download/releases/MITK-Diffusion-2011/documentation/html/index.html here]
 
−
 
 
−
You can download the MITK Diffusion information brochure [http://mitk.org/download/releases/MITK-Diffusion-2011/documentation/pdf/refman.pdf here] (PDF)
 
−
 
 
−
 
 
−
=== Available Installer ===
 
−
The installer is available for platforms enlisted in the table. Support for other systems is only experimental.
 
−
{| class="wikitable" width=100% style="background-color:#ffffff;"
 
−
! Windows
 
−
| Vista, Windows 7
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2011/MITK-Diffusion-2011_Windows_32Bit.exe MS Windows (32 bit) installer]
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2011/MITK-Diffusion-2011_Windows_64Bit.exe MS Windows (64 bit) installer]
 
−
|-
 
−
! Linux
 
−
| Ubuntu 10.04 and newer
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2011/MITK-Diffusion-2011_Ubunu_10.04_32Bit.tar.gz Ubuntu (32 bit), tar.gz archive]
 
−
| [https://www.mitk.org/download/releases/MITK-Diffusion-2011/MITK-Diffusion-2011_Ubunu_10.04_64Bit.tar.gz Ubuntu (64 bit), tar.gz archive]
 
−
|-
 
−
! Mac OS X
 
−
| 10.6 Snow Leopard and newer
 
−
|colspan="2" <style="text-align:center">|[https://www.mitk.org/download/releases/MITK-Diffusion-2011/MITK-Diffusion-2011_OSX.dmg OS X disk image (.dmg)]
 
−
|}
 
−
 
 
−
</div></div>
 

Latest revision as of 12:35, 24 August 2018

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